Alternatives and similar repositories for GEARS_misc

Users that are interested in GEARS_misc are comparing it to the libraries listed below

• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆75Updated last month
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 8 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago
• siyuh / Squidiff
  ☆14Updated 7 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 8 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆89Updated last week
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆115Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆98Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆165Updated 3 years ago
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆300Updated 8 months ago
• zhanglab-wbgcas / STGRNS
  ☆30Updated 2 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• ml4bio / CLEAR
  CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
  ☆34Updated 2 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆94Updated last week
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆62Updated 10 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆35Updated last year
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 2 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• jkobject / geneformer
  ☆81Updated 2 months ago
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated 4 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 9 months ago