Genentech / PerturbQA
☆12Updated last month
Alternatives and similar repositories for PerturbQA:
Users that are interested in PerturbQA are comparing it to the libraries listed below
- ☆58Updated 7 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆27Updated 7 months ago
- Contextual AI models for single-cell protein biology☆83Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆22Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆30Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆111Updated last month
- BulkRNABert: Cancer prognosis from bulk RNA-seq based language models☆20Updated 8 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆40Updated 3 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆58Updated 3 weeks ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆88Updated last week
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆47Updated 3 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆40Updated 7 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆66Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆79Updated last year
- Single-Cell (Perturbation) Model Library☆45Updated 2 weeks ago
- ☆27Updated last year
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆16Updated last month
- A model developed for the generation of scRNA-seq data☆55Updated last month
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆29Updated this week
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆39Updated 10 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆57Updated 10 months ago
- Single-cell spatial elucidation through image-augmented graph transformer☆31Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆97Updated 7 months ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆12Updated this week
- ☆53Updated 11 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 2 months ago
- Paper collection for single cell foundation models☆30Updated last year
- ☆50Updated 3 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆118Updated last month