☆55Sep 23, 2025Updated last year
Alternatives and similar repositories for PerturbQA
Users that are interested in PerturbQA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Dec 18, 2024Updated last year
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated last year
- Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers☆143Nov 24, 2025Updated 10 months ago
- Causal discovery of gene regulatory programs from single-cell genomics☆24Sep 5, 2025Updated last year
- ☆18Jan 30, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Decoding Single-Cell Omics of Perturbation Responses Using DeSCOPE☆29Sep 21, 2026Updated 3 weeks ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- ☆101Aug 10, 2026Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆162Jul 27, 2026Updated 2 months ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆17Mar 24, 2026Updated 6 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆131Jul 6, 2025Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Aug 31, 2026Updated last month
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆72Jun 6, 2020Updated 6 years ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 21, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CompBioBench: A benchmark of 100 diverse, verifiable questions for agents for computational biology (scripts for running agents)☆52Apr 6, 2026Updated 6 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 months ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆26Mar 12, 2025Updated last year
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆43May 19, 2026Updated 4 months ago
- Single-cell perturbation effects prediction benchmark☆106Sep 14, 2026Updated last month
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- UniGraph2: Learning a Unified Embedding Space to Bind Multimodal Graphs (WWW'25)☆18Apr 22, 2025Updated last year
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆52Jan 30, 2026Updated 8 months ago
- Benchmark for agentic single cell data analysis☆36Jun 10, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reusability report of scBERT☆14Jul 14, 2024Updated 2 years ago
- Sample, estimate, aggregate: A recipe for causal discovery foundation models☆18Jun 21, 2024Updated 2 years ago
- ☆31Oct 14, 2024Updated 2 years ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆346Jul 8, 2026Updated 3 months ago
- Raman2RNA code base.☆16Sep 8, 2023Updated 3 years ago
- A Claude Code Skill that converts research papers into executable code - no extra API costs☆42Jan 8, 2026Updated 9 months ago
- ☆75Jan 14, 2026Updated 9 months ago
- Single-Cell (Perturbation) Model Library☆129Jul 27, 2026Updated 2 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆723Jul 24, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official MCP server implementation for accessing Open Targets Data☆37Oct 6, 2026Updated last week
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 5 months ago
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆27Aug 28, 2026Updated last month
- ☆20May 23, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆52Mar 25, 2026Updated 6 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆417Feb 1, 2025Updated last year
- Robust and efficient analysis of single-cell perturbation studies☆17Sep 24, 2026Updated 2 weeks ago