Genentech / PerturbQALinks
☆13Updated 5 months ago
Alternatives and similar repositories for PerturbQA
Users that are interested in PerturbQA are comparing it to the libraries listed below
Sorting:
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆90Updated last year
- Paper collection for single cell foundation models☆31Updated last year
- ☆72Updated 11 months ago
- A model developed for the generation of scRNA-seq data☆68Updated 5 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆121Updated 6 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆29Updated 11 months ago
- Contextual AI models for single-cell protein biology☆88Updated 5 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated last week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 4 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆60Updated 7 months ago
- ☆30Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆40Updated 3 weeks ago
- Code for evaluating single cell foundation models scBERT and scGPT☆45Updated 11 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month
- Modeling complex perturbations with CellFlow☆74Updated last week
- Comprehensive suite for evaluating perturbation prediction models☆65Updated last week
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆19Updated 4 months ago
- Awesome-AI-Virtual-Cell☆67Updated this week
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated last month
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆107Updated 11 months ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆58Updated this week
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆55Updated 7 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆72Updated 5 months ago
- ☆52Updated 8 months ago
- a unified single-cell data integration framework by optimal transport☆35Updated 10 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆142Updated 9 months ago
- Single-Cell (Perturbation) Model Library☆64Updated last week
- ☆75Updated 2 months ago
- ☆20Updated 9 months ago
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year