Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
☆13Sep 20, 2021Updated 4 years ago
Alternatives and similar repositories for aifi-swanson-teaseq
Users that are interested in aifi-swanson-teaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 4 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 7 months ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- ☆21Jun 17, 2024Updated last year
- ☆15Mar 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- # DNN-HMM This directory contains all the Perl scripts and MATLAB codes we writed for the identification of replication domains using DNN…☆12Jan 12, 2016Updated 10 years ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Feb 26, 2018Updated 8 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 11 months ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated 2 weeks ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- MaveDB API☆16Updated this week
- Tidyverse workshop series materials☆16May 3, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A repository for reproducing experiments from the TxPert paper☆26Jan 9, 2026Updated 2 months ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆20Mar 14, 2026Updated 2 weeks ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆25Mar 20, 2026Updated last week
- Benchmarking computational single cell ATAC-seq methods☆185Nov 30, 2020Updated 5 years ago
- Sample models for the PhysiCell grammar / rules paper☆30Jul 21, 2025Updated 8 months ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- AWS IAM Client Package☆14May 11, 2020Updated 5 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Peak caller for CUT&TAG data☆30Aug 18, 2022Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆29Oct 4, 2021Updated 4 years ago
- ☆18Feb 19, 2026Updated last month
- colored table output in R terminal☆17Sep 27, 2022Updated 3 years ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 5 years ago
- ☆11Mar 31, 2023Updated 2 years ago
- This fork of Illumina/ExpansionHunter introduces new features and optimizations☆15Mar 11, 2026Updated 2 weeks ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated last month
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Take your Shiny skills to the next level☆22Aug 19, 2024Updated last year
- Registry for scverse ecosystem packages☆34Updated this week
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- ☆14Aug 3, 2022Updated 3 years ago
- Updated DANPOS2 to work with python3☆24Feb 25, 2026Updated last month
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago