Alternatives and similar repositories for scNODE:

Users that are interested in scNODE are comparing it to the libraries listed below

• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆61Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• Spencerfar / LatentVelo
  ☆24Updated last year
• dpeerlab / ENVI
  ☆48Updated last month
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 11 months ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆68Updated last month
• yutongo / TIGON
  ☆38Updated last month
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 6 months ago
• zhaofangyuan98 / SDMBench
  ☆34Updated 11 months ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 10 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• QuKunLab / SPACEL
  ☆56Updated 9 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆46Updated 3 weeks ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last week
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆16Updated 7 months ago
• zhanglabtools / STAligner
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
  ☆22Updated last year
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated 2 weeks ago
• YosefLab / velovi
  ☆39Updated this week
• theislab / scTab
  ☆58Updated 7 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆57Updated 10 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆30Updated last month
• prabhakarlab / Banksy_py
  ☆47Updated 4 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆86Updated 4 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆39Updated last year