scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
☆32Oct 11, 2024Updated last year
Alternatives and similar repositories for scNODE
Users that are interested in scNODE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆81Jul 20, 2025Updated 10 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated last year
- Spatial Single Cell transcriptomic library☆21Jan 15, 2026Updated 4 months ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- Comprehensive analysis of single cell RNAseq and spatial transcriptomics in human acute and chronic wounds☆15Mar 19, 2025Updated last year
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆62Apr 12, 2026Updated last month
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 2 weeks ago
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 3 months ago
- Superpixel for CIFAR dataset☆11Sep 9, 2022Updated 3 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- ☆12May 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆29Jan 30, 2026Updated 4 months ago
- ☆35Feb 21, 2024Updated 2 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆45Feb 19, 2026Updated 3 months ago
- ☆12Nov 13, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated last year
- reticulate-free single cell format conversion☆218Mar 16, 2026Updated 2 months ago
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GENOT: Generative Neural Optimal Transport☆16Dec 18, 2024Updated last year
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated 2 years ago
- ☆30May 2, 2024Updated 2 years ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆16Sep 11, 2025Updated 8 months ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated last month
- ☆32May 11, 2026Updated 3 weeks ago
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 8 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆15Jul 8, 2019Updated 6 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 7 months ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 5 years ago
- The code of "Deep Regression Representation Learning with Topology" in ICML 2024☆14Jul 4, 2024Updated last year
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆22May 1, 2024Updated 2 years ago