scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
☆31Oct 11, 2024Updated last year
Alternatives and similar repositories for scNODE
Users that are interested in scNODE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆80Jul 20, 2025Updated 9 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 10 months ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 3 months ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R implementation of GeneTrajectory☆69Apr 5, 2024Updated 2 years ago
- Comprehensive analysis of single cell RNAseq and spatial transcriptomics in human acute and chronic wounds☆15Mar 19, 2025Updated last year
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆34Mar 26, 2026Updated last month
- ☆12May 29, 2024Updated last year
- ☆33Feb 21, 2024Updated 2 years ago
- ☆29Jan 30, 2026Updated 2 months ago
- Accompanying code for the ProteinGLUE method☆12Apr 12, 2022Updated 4 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆44Feb 19, 2026Updated 2 months ago
- ☆12Nov 13, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago
- reticulate-free single cell format conversion☆216Mar 16, 2026Updated last month
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- GENOT: Generative Neural Optimal Transport☆15Dec 18, 2024Updated last year
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆16Sep 11, 2025Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆31Jan 14, 2026Updated 3 months ago
- ☆32Jul 29, 2025Updated 9 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 8 months ago
- Data analysis for the moscot-framework project☆23Feb 27, 2026Updated 2 months ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 7 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆15Jul 8, 2019Updated 6 years ago
- Sorting and subsampling phylogenomic datasets☆32Apr 9, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 6 months ago
- The code of "Deep Regression Representation Learning with Topology" in ICML 2024☆14Jul 4, 2024Updated last year
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated last year
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- ☆25Feb 20, 2025Updated last year
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago