rsinghlab / scNODELinks
scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
☆22Updated 9 months ago
Alternatives and similar repositories for scNODE
Users that are interested in scNODE are comparing it to the libraries listed below
Sorting:
- Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆13Updated 6 months ago
- End-to-end analysis of spatial multi-omics data☆81Updated last week
- Spatial-Linked Alignment Tool☆87Updated 6 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆67Updated last year
- ☆38Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- overview of spatial datasets☆75Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 4 months ago
- ☆80Updated 11 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 9 months ago
- ☆59Updated 10 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆142Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆34Updated 2 months ago
- ☆59Updated 11 months ago
- ☆82Updated 2 years ago
- ☆48Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆100Updated 4 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 4 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- ☆46Updated 3 months ago
- ☆59Updated last week
- ☆15Updated last year
- ☆13Updated 2 weeks ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆58Updated last year
- ☆24Updated last year