DeepRUOTv2 (Dynamical Optimal Transport Tools)
☆24Dec 10, 2025Updated 9 months ago
Alternatives and similar repositories for DeepRUOTv2
Users that are interested in DeepRUOTv2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆37Dec 10, 2025Updated 9 months ago
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆19Jun 30, 2026Updated 3 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- [NeurIPS 2025] Implementation for the paper "Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow"☆30Nov 4, 2025Updated 11 months ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Implementation of the Gromov-Wasserstein distance to the setting of Unbalanced Optimal Transport☆50Mar 13, 2023Updated 3 years ago
- ☆23Feb 4, 2025Updated last year
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 4 months ago
- Fast algorithms for GLM-PCA.☆18Mar 12, 2025Updated last year
- ☆15Jun 27, 2025Updated last year
- ☆26Aug 15, 2023Updated 3 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆35Oct 11, 2024Updated last year
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆72Apr 12, 2026Updated 5 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆15Aug 5, 2022Updated 4 years ago
- A modular, efficient and portable tool for running parallel approximate Bayesian computation algorithms.☆18Feb 20, 2021Updated 5 years ago
- Post hoc inference via multiple testing☆12Sep 30, 2026Updated last week
- A curated collection of KAN (Kolmogorov-Arnold Network) resources—libraries, projects, tutorials, papers, and more—for researchers and de…☆21Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 3 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆30Feb 21, 2023Updated 3 years ago
- ☆54May 18, 2026Updated 4 months ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 3 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆18Sep 16, 2026Updated 3 weeks ago
- ☆27Mar 31, 2026Updated 6 months ago
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆12Jan 27, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated last year
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆30Feb 17, 2026Updated 7 months ago
- Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold☆77Mar 4, 2025Updated last year
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- ☆146Jun 25, 2026Updated 3 months ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- The code of "Deep Regression Representation Learning with Topology" in ICML 2024☆14Jul 4, 2024Updated 2 years ago