Alternatives and similar repositories for MIOFlow

Users that are interested in MIOFlow are comparing it to the libraries listed below

• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆12Updated 7 months ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆126Updated last year
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆148Updated 11 months ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆77Updated last year
• Genentech / sVAE
  ☆63Updated 2 years ago
• bunnech / condot
  Supervised Training of Conditional Monge Maps
  ☆19Updated last year
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• bunnech / phd_thesis
  PhD Thesis
  ☆36Updated 2 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• alexw16 / gridnet
  ☆15Updated 3 months ago
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• openproblems-bio / neurips2021_multimodal_topmethods
  ☆79Updated 3 years ago
• causalbench / causalbench
  ☆52Updated 4 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆115Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆91Updated last week
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆77Updated 8 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated last year
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆35Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆68Updated last year
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆19Updated 5 months ago
• rvinas / HYFA
  Hypergraph Factorisation
  ☆26Updated 11 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆31Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 3 months ago
• microsoft / zero-shot-scfoundation
  ☆73Updated last year
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• uhlerlab / discrepancy_vae
  code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions
  ☆16Updated last year