AI4SCR / MatchCLOTLinks
Python package implementing our method MatchCLOT for multimodal single-cell data integration
☆14Updated 2 years ago
Alternatives and similar repositories for MatchCLOT
Users that are interested in MatchCLOT are comparing it to the libraries listed below
Sorting:
- ☆56Updated 3 years ago
- a unified single-cell data integration framework by optimal transport☆35Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆150Updated 2 months ago
- Identify spatial domain☆88Updated 8 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- ☆15Updated 7 months ago
- ☆158Updated last year
- Her2 Breast Cancer Project☆92Updated 3 years ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- ☆66Updated last year
- ☆33Updated last year
- ☆116Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆118Updated this week
- ☆33Updated last year
- ☆52Updated 3 months ago
- ☆41Updated 2 years ago
- ☆21Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆156Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- ☆19Updated 2 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆77Updated last year
- A model developed for the generation of scRNA-seq data☆84Updated 2 weeks ago
- The software of Pamona, a partial manifold alignment algorithm.☆20Updated 4 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 8 months ago
- ☆53Updated 4 years ago
- ☆70Updated 6 months ago