Alternatives and similar repositories for MatchCLOT

Users that are interested in MatchCLOT are comparing it to the libraries listed below

• uhlerlab / cross-modal-autoencoders
  ☆55Updated 2 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 11 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 6 months ago
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆22Updated last year
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆87Updated 2 years ago
• kpcoleman / miso
  ☆28Updated 8 months ago
• daviddaiweizhang / istar
  ☆141Updated 9 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated 3 weeks ago
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆55Updated last year
• cmzuo11 / scMVAE
  Deep joint-leaning single-cell multi-omics model
  ☆15Updated 3 years ago
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆28Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆94Updated last year
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated last year
• jsxlei / scCLIP
  ☆30Updated last year
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆81Updated 11 months ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆81Updated 3 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆73Updated last year
• suinleelab / contrastiveVI
  ☆56Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 6 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆71Updated 7 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated last year
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆18Updated 2 years ago
• JinmiaoChenLab / SEDR
  ☆61Updated 10 months ago
• TencentAILabHealthcare / MLA-GNN
  ☆43Updated 9 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆75Updated 7 months ago
• KlugerLab / SIMVI
  ☆13Updated 2 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆144Updated 10 months ago
• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• biomed-AI / ConGI
  ☆13Updated last year