dpeerlab / WassersteinWormhole
Transformer Based Embeddings of Wasserstein Distance
☆16Updated 4 months ago
Alternatives and similar repositories for WassersteinWormhole:
Users that are interested in WassersteinWormhole are comparing it to the libraries listed below
- ☆58Updated last year
- Supervised Training of Conditional Monge Maps☆16Updated last year
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated this week
- PhD Thesis☆31Updated last year
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆69Updated last year
- ☆23Updated 2 months ago
- ☆10Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆126Updated 4 months ago
- Learning meaningful representations of genes☆15Updated 4 months ago
- Global Waddington-OT☆22Updated 6 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- ☆35Updated 4 months ago
- Diffusion model for gene regulatory network inference.☆16Updated 9 months ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆11Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆59Updated 10 months ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 weeks ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆29Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆26Updated 7 months ago
- ☆30Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆20Updated last month
- Contrastive neighbor embeddings☆52Updated last week
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated 11 months ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆15Updated 3 weeks ago
- ☆32Updated 2 years ago
- Git Repo for simulating Boolean Models☆33Updated 9 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 3 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆15Updated 3 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last month