Alternatives and similar repositories for WassersteinWormhole

Users that are interested in WassersteinWormhole are comparing it to the libraries listed below

• Genentech / sVAE
  ☆66Updated 2 years ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆157Updated last year
• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆12Updated 11 months ago
• bunnech / condot
  Supervised Training of Conditional Monge Maps
  ☆19Updated 2 years ago
• KrishnaswamyLab / MIOFlow
  ☆34Updated 3 months ago
• Genentech / MMFM
  ☆19Updated last year
• bunnech / phd_thesis
  PhD Thesis
  ☆38Updated 2 years ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆78Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆118Updated this week
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• zhenyiizhang / DeepRUOT
  Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)
  ☆31Updated 2 months ago
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated 2 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆23Updated 11 months ago
• cantinilab / stories
  Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
  ☆24Updated 3 months ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆130Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 7 months ago
• aristoteleo / tabula
  federated learning with tabular learning
  ☆26Updated 11 months ago
• Teichlab / celcomen
  ☆21Updated last week
• Genentech / pascient
  ☆18Updated 9 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆21Updated 8 months ago
• causalbench / causalbench
  ☆58Updated 8 months ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 10 months ago
• uhlerlab / discrepancy_vae
  code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions
  ☆15Updated 2 years ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆32Updated last year
• cantinilab / scconfluence
  A novel method for single-cell diagonal integration: scConfluence
  ☆26Updated 3 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 3 years ago
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆21Updated 11 months ago
• scDiffEq / scDiffEq
  Learn single-cell dynamics using neural differential equations
  ☆57Updated last month
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆41Updated last year