Alternatives and similar repositories for WassersteinWormhole

Users that are interested in WassersteinWormhole are comparing it to the libraries listed below

• Genentech / sVAE
  ☆63Updated last year
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆140Updated 8 months ago
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆30Updated last year
• Teichlab / celcomen
  ☆15Updated 3 weeks ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 2 months ago
• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆11Updated 4 months ago
• Genentech / pascient
  ☆16Updated 2 months ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 4 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 3 weeks ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆73Updated last year
• cantinilab / stories
  Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
  ☆13Updated last month
• theislab / inVAE
  Invariant Representation learning
  ☆17Updated last year
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• theislab / prophet
  ☆34Updated 2 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 11 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆66Updated 4 months ago
• vandijklab / CINEMA-OT
  ☆32Updated 3 months ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated last week
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆68Updated this week
• yuzhenmao / ScRAT
  Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics).
  ☆11Updated last year
• suinleelab / contrastiveVI
  ☆55Updated last year
• KrishnaswamyLab / MIOFlow
  ☆27Updated last week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆36Updated this week
• nitzanlab / biolord
  ☆80Updated 11 months ago
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated last month
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆102Updated 11 months ago
• bunnech / condot
  Supervised Training of Conditional Monge Maps
  ☆18Updated last year
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆112Updated last year
• chanzuckerberg / scEvalsJam
  ☆12Updated 10 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year