dpeerlab / WassersteinWormhole
Transformer Based Embeddings of Wasserstein Distance
☆13Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for WassersteinWormhole
- ☆56Updated last year
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated last year
- Supervised Training of Conditional Monge Maps☆13Updated last year
- ☆20Updated last month
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆66Updated 10 months ago
- PhD Thesis☆28Updated last year
- Proximal Optimal Transport Modeling of Population Dynamics (AISTATS 2022)☆16Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆17Updated 2 weeks ago
- ☆34Updated 2 weeks ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆118Updated 3 weeks ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 3 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆55Updated 6 months ago
- Contrastive neighbor embeddings☆52Updated 7 months ago
- Multi-omic single-cell optimal transport tools☆116Updated this week
- ☆23Updated 2 years ago
- Archetypal Analysis network (AAnet)☆31Updated 3 weeks ago
- Tensorflow implementation for the SVGP-VAE model.☆22Updated 3 years ago
- A model developed for the generation of scRNA-seq data☆38Updated 2 months ago
- ☆31Updated 2 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆15Updated 8 months ago
- ☆16Updated 3 years ago
- Global Waddington-OT☆21Updated 3 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆22Updated 3 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated 2 months ago
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆100Updated 3 months ago
- Diffusion model for gene regulatory network inference.☆15Updated 6 months ago
- Template repository for creating novel models with scvi-tools☆19Updated last year
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆27Updated 8 months ago