ANHIG / IPDMHC
Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute
☆14Updated 2 months ago
Alternatives and similar repositories for IPDMHC:
Users that are interested in IPDMHC are comparing it to the libraries listed below
- R package for nucleotide conversion sequencing data analysis☆13Updated 2 months ago
- ☆9Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 11 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆10Updated last year
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆12Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 8 months ago
- ☆15Updated 2 years ago
- ☆12Updated this week
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated last month
- ☆16Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Updated 3 years ago
- Package to design primers for MutaSeq and related methods☆11Updated 4 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆22Updated this week
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- ☆10Updated 4 years ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆10Updated last month
- Snakemake workflow for neoantigen prediction☆14Updated last year
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆9Updated 2 years ago
- ☆17Updated 10 months ago
- Variant catalogue pipeline☆25Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ☆10Updated last month
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆12Updated 8 months ago
- ☆15Updated last year