WXlab-NJMU / scrna-recom
collected resource for scRNA-seq analysis
☆59Updated last year
Alternatives and similar repositories for scrna-recom:
Users that are interested in scrna-recom are comparing it to the libraries listed below
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆105Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆123Updated 9 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 6 months ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆90Updated 3 weeks ago
- ☆66Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆80Updated last year
- Reanalyze of GSE111527 scRNA-seq data☆19Updated 4 years ago
- ☆102Updated 4 years ago
- A R package for advanced single cell data viz☆66Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆77Updated 6 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆113Updated 7 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆53Updated 4 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆48Updated 3 years ago
- Create stacked violin plot☆46Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- ☆45Updated 3 years ago
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- A tool for semi-automatic cell type harmonization and integration☆104Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- Codes used in pan-T cell analysis☆58Updated 2 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆41Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 8 months ago
- Methods to discover gene programs on single-cell data☆114Updated 2 weeks ago
- ☆79Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆141Updated last month