Alternatives and similar repositories for jqmm:

Users that are interested in jqmm are comparing it to the libraries listed below

• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 6 months ago
• matthiaskoenig / brendapy
  BRENDA parser in python
  ☆21Updated 2 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 7 months ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆20Updated 6 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated last week
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆27Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆56Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆87Updated 6 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 4 months ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆31Updated last week
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• JBEI / KineticLearning
  Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
  ☆28Updated 2 years ago
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆19Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 3 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆54Updated 3 months ago
• AMarinhoSN / FleXgeo
  A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
  ☆8Updated 6 years ago
• Robaina / BRENDApyrser
  A Python parser for the BRENDA database
  ☆28Updated last year
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• LPDI-EPFL / rstoolbox
  Python Toolbox For Rosetta Silent Files Processing
  ☆15Updated 5 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• donaldlab / OSPREY3
  Open Source Protein REdesign for You v3
  ☆50Updated 3 months ago