Alternatives and similar repositories for jqmm

Users that are interested in jqmm are comparing it to the libraries listed below

• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 9 months ago
• matthiaskoenig / brendapy
  BRENDA parser in python
  ☆22Updated 3 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• SBRG / MASSpy
  ☆24Updated 2 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆21Updated 9 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆14Updated last month
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆32Updated 2 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆55Updated 6 months ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆56Updated 2 months ago
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆71Updated 3 weeks ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• ElofssonLab / TOPCONS2
  Github for the TOPCONS2
  ☆17Updated 3 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 4 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 3 weeks ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated 3 weeks ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆94Updated last month
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• JudeWells / chainsaw
  ☆39Updated 8 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆82Updated 5 years ago
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆57Updated 3 months ago