JBEI / jqmm
JBEI Quantitative Metabolic Modeling library
☆12Updated 5 years ago
Alternatives and similar repositories for jqmm:
Users that are interested in jqmm are comparing it to the libraries listed below
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 6 months ago
- BRENDA parser in python☆21Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 7 months ago
- A python toolbox for 13C metabolic flux analysis☆20Updated 6 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated last week
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- ☆22Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- Fast and accurate protein structure prediction☆49Updated last month
- A Python platform for Structural Bioinformatics☆56Updated last year
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆87Updated 6 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 4 months ago
- Symbolic Kinetic Models with Python☆31Updated last week
- ☆20Updated 3 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆19Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 3 months ago
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆8Updated 6 years ago
- A Python parser for the BRENDA database☆28Updated last year
- ☆32Updated 5 months ago
- Python Toolbox For Rosetta Silent Files Processing☆15Updated 5 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- Open Source Protein REdesign for You v3☆50Updated 3 months ago