Alternatives and similar repositories for RNATracker

Users that are interested in RNATracker are comparing it to the libraries listed below

• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• lab-conrad / resVAE
  resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…
  ☆12Updated 2 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• HantaoShu / DeepSEM
  ☆84Updated 2 years ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 6 years ago
• biomed-AI / GraphSCI
  Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks
  ☆19Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• ciortanmadalina / graph-sc
  ☆18Updated 3 years ago
• melobio / Concerto-reproducibility
  ☆39Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• rvinas / HYFA
  Hypergraph Factorisation
  ☆24Updated 8 months ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆27Updated 3 years ago
• ma-compbio / SPEID
  ☆14Updated 8 years ago
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆102Updated last year
• idekerlab / Network_Evaluation_Tools
  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
  ☆32Updated 2 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• zpliulab / GENELink
  ☆34Updated 2 years ago
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 5 months ago
• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆23Updated 3 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 3 years ago
• theislab / scgen-reproducibility
  ☆28Updated 4 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆23Updated 7 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 9 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago