zuozhaorui / SWnetLinks
Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structures"
☆20Updated 3 years ago
Alternatives and similar repositories for SWnet
Users that are interested in SWnet are comparing it to the libraries listed below
Sorting:
- ☆27Updated 4 months ago
- Functional Embedding of Gene Signatures☆46Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated 3 weeks ago
- Python package to load and query ARCHS4 data☆23Updated last month
- A Deep Learning based Efficacy Prediction System for drug discovery☆70Updated 2 years ago
- A deep generative neural network based approach to impute drug response☆21Updated 4 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated this week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆25Updated 3 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- ☆10Updated 3 years ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Updated 7 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- ☆37Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- ☆33Updated 2 years ago
- scDrug: From scRNA-seq to Drug Repositioning☆35Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- ☆19Updated 4 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 5 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- CLUMPS adapted to post-translational modifications.☆10Updated 3 months ago
- ☆10Updated 3 months ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ☆18Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- The Agentic BioML Challenge + AutoBioML framework☆14Updated 2 months ago
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Updated 3 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago