yoshihikosuzuki / ClassPro
A K-mer classifier for HiFi reads
☆9Updated last year
Alternatives and similar repositories for ClassPro:
Users that are interested in ClassPro are comparing it to the libraries listed below
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆15Updated 3 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- Extracting paths from assembly graphs☆22Updated 10 months ago
- ☆22Updated 6 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- General purpose utility related to GAF files☆22Updated last month
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated 2 years ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Align subreads to ccs reads☆13Updated last year
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 8 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Phasing reads with secondary alignments☆17Updated 3 months ago
- Convert HAL to VG☆21Updated 6 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Computational Pangenomics☆17Updated 2 years ago
- Genome Assembly 102☆14Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆16Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Scaffolding with Ultralong Reads☆15Updated 4 years ago