pyRforest: A comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R
☆14Aug 20, 2024Updated last year
Alternatives and similar repositories for pyRforest
Users that are interested in pyRforest are comparing it to the libraries listed below
Sorting:
- ☆10Apr 1, 2025Updated 11 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- ☆22Dec 9, 2023Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- Linear Decomposition Model☆25Jun 16, 2023Updated 2 years ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Feb 17, 2023Updated 3 years ago
- Naming avoiding ambiguity automatically assigning valid identifiers☆32Mar 18, 2021Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 10 months ago
- BioAutoML: Automated Feature Engineering and Metalearning☆42Nov 4, 2025Updated 3 months ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆22Updated this week
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- ANnotation-based ANalysis of Specific Interactions☆10Oct 10, 2025Updated 4 months ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated 3 weeks ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆20Dec 9, 2025Updated 2 months ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Basics of the OSCA book☆14Sep 29, 2025Updated 5 months ago
- ☆10Mar 29, 2025Updated 11 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated last month
- ☆10Oct 18, 2021Updated 4 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 4 years ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆12Dec 16, 2025Updated 2 months ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- ☆12Nov 26, 2025Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Jan 27, 2026Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- ☆46Nov 21, 2025Updated 3 months ago
- A Rust-based library for phylogenetic analysis and manipulation☆16Feb 10, 2026Updated 2 weeks ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- Pan-genome Analysis☆12May 4, 2025Updated 9 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 2 months ago
- euroleaguer provides an easy way to retrieve data from EuroLeague and EuroCup API with R. This is an un-official API wrapper and we recom…☆11Jan 1, 2025Updated last year