Alternatives and similar repositories for pyRforest

Users that are interested in pyRforest are comparing it to the libraries listed below

• js2264 / tidyCoverage
  ☆22Updated last year
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 3 months ago
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆28Updated last month
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆27Updated last month
• gtonkinhill / TCGA_analysis
  ☆27Updated 2 years ago
• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 4 years ago
• tkzeng / GeneBayes
  ☆26Updated 3 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 6 months ago
• pachterlab / fastQpick
  ☆27Updated 8 months ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 4 months ago
• kaspermunch / PopulationGenomicsCourse
  Course in population genomics at BiRC
  ☆12Updated 5 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 5 months ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated 4 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆113Updated 2 months ago
• bardetlab / methylasso
  A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets
  ☆19Updated 3 weeks ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆27Updated this week
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated last week
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆16Updated 3 months ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆27Updated last year
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated 2 months ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated this week
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆19Updated 4 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 4 years ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 3 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated 2 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago