AlexandrovLab / TMB_plotterLinks
Python function for TMB snake plots
☆16Updated 5 years ago
Alternatives and similar repositories for TMB_plotter
Users that are interested in TMB_plotter are comparing it to the libraries listed below
Sorting:
- ☆12Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated this week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last year
- ☆12Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- DriverPower☆26Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 9 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- ☆18Updated 4 years ago
- ☆17Updated last year
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- ☆12Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- iread☆25Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago