Alternatives and similar repositories for TMB_plotter

Users that are interested in TMB_plotter are comparing it to the libraries listed below

• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last month
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 9 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• marcjwilliams1 / SubClonalSelection.jl
  Inferring selection in cancer sequencing data using ABC and population based simulations
  ☆11Updated 4 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• bioinform / ecTMB
  ☆18Updated 3 years ago
• caravagnalab / mobster
  Model-based subclonal deconvolution from bulk sequencing.
  ☆33Updated 6 months ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆13Updated 3 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• daisybio / SPONGE
  Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
  ☆12Updated 11 months ago
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆36Updated 3 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• ju-lab / LungCancer_SV_timing_analyses
  ☆11Updated 5 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated last year
• skandlab / MutSpot
  ☆16Updated 2 years ago
• dami82 / mutSignatures
  mutSignatures R package - updated (dev) version - 2.1.4
  ☆14Updated 2 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• hanasusak / cDriver
  cDriver R package for finding candidate driver genes in cancers
  ☆18Updated 7 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 11 months ago