BIMSBbioinfo / pigx_rnaseq
Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
☆21Updated 3 weeks ago
Alternatives and similar repositories for pigx_rnaseq:
Users that are interested in pigx_rnaseq are comparing it to the libraries listed below
- R package wrapping bedtools☆38Updated 4 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 2 weeks ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- HOT regions paper☆11Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆27Updated 3 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 10 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- iread☆23Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- interactive plots for differential expression analysis☆25Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- ☆9Updated 4 years ago
- Query the gene models of a given organism/assembly☆26Updated 2 months ago
- ☆14Updated 2 years ago
- ☆29Updated 5 years ago
- ☆21Updated 4 months ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago