BIMSBbioinfo / pigx_rnaseqLinks
Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
☆20Updated 7 months ago
Alternatives and similar repositories for pigx_rnaseq
Users that are interested in pigx_rnaseq are comparing it to the libraries listed below
Sorting:
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 4 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆20Updated last year
- Genomic plot in trellis layout☆41Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- Query the gene models of a given organism/assembly☆27Updated last week
- HOT regions paper☆11Updated 6 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 3 months ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Updated last week
- ☆28Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago