yachielab / SPADELinks
☆15Updated 2 years ago
Alternatives and similar repositories for SPADE
Users that are interested in SPADE are comparing it to the libraries listed below
Sorting:
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Hitting associations with k-mers☆44Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Updated 3 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆25Updated 6 months ago
- ☆36Updated last year
- Scoring GT/AG sites for improving spliced alignment☆46Updated this week
- Master of Pores 2☆23Updated 11 months ago
- ☆51Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- ☆33Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆16Updated 6 years ago
- new repo☆28Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago
- ☆29Updated 2 years ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Updated 2 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 2 weeks ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated this week
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year