A deep convolutional neural network for the accurate prediction of silencers
☆16May 23, 2023Updated 3 years ago
Alternatives and similar repositories for DeepSilencer
Users that are interested in DeepSilencer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell epigenomic data annotation via supervised non-linear embedding☆24Apr 14, 2022Updated 4 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆20Jan 6, 2024Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- A foundation model for single-cell epigenomic data☆65Jun 3, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆13Aug 21, 2025Updated 9 months ago
- ☆14Mar 22, 2018Updated 8 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- ☆14Jul 1, 2025Updated 11 months ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Jun 5, 2026Updated last week
- ☆22Apr 2, 2015Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Implementation of Stochastic Progressive Photon Mapping☆23Aug 13, 2019Updated 6 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 3 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆17Mar 27, 2018Updated 8 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for PFRED GUI codes☆10Feb 25, 2020Updated 6 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆15Apr 20, 2024Updated 2 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- ☆35Jun 9, 2022Updated 4 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆22Jan 23, 2026Updated 4 months ago
- ☆13Dec 7, 2021Updated 4 years ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated 3 months ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 4 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Apr 15, 2024Updated 2 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago