xy-chen16 / stPlus
stPlus: reference-based enhancement of spatial transcriptomics
☆18Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for stPlus
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- ☆49Updated 3 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆29Updated 7 months ago
- overview of spatial datasets☆68Updated 8 months ago
- ☆34Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated last year
- ☆60Updated last year
- ☆78Updated this week
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- ☆32Updated 9 months ago
- Bayesian Analytics for Spatial Segmentation☆21Updated last month
- Spatial-Linked Alignment Tool☆79Updated 5 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆56Updated 11 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 7 months ago
- ☆22Updated last year
- ☆37Updated 3 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆40Updated last year
- ☆21Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆28Updated 10 months ago
- Reproducing result from the paper☆33Updated 3 years ago
- ☆44Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- ☆28Updated last year
- ☆107Updated 2 years ago
- ☆43Updated this week
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆27Updated this week
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆25Updated this week
- Predict RNA velocity through deep learning☆62Updated 11 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆77Updated last year