Alternatives and similar repositories for stPlus

Users that are interested in stPlus are comparing it to the libraries listed below

• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆38Updated last year
• TencentAILabHealthcare / spatialID
  ☆40Updated 2 years ago
• QuKunLab / SpatialBenchmarking
  ☆124Updated 3 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last month
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• QuKunLab / SPACEL
  ☆60Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆40Updated 9 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆30Updated 3 months ago
• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆61Updated 2 years ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆61Updated 2 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆46Updated 4 years ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆55Updated 5 months ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆96Updated 8 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 5 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆78Updated 6 months ago
• uhlerlab / STACI
  ☆15Updated 2 years ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆58Updated last month
• LiQian-XC / sctour
  A deep learning architecture for robust inference and accurate prediction of cellular dynamics
  ☆68Updated 3 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆46Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆88Updated 10 months ago
• prabhakarlab / Banksy_py
  ☆66Updated last week
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆97Updated 3 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago