Alternatives and similar repositories for stPlus

Users that are interested in stPlus are comparing it to the libraries listed below

• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• QuKunLab / SPACEL
  ☆59Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• QuKunLab / SpatialBenchmarking
  ☆122Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆45Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆37Updated 7 months ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆59Updated 2 years ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• Durenlab / LINGER
  ☆114Updated 3 months ago
• zcang / COMMOT
  ☆124Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 10 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆132Updated 6 months ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆94Updated 3 years ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆56Updated this week
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆55Updated last week
• TencentAILabHealthcare / spatialID
  ☆40Updated 2 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 7 months ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆68Updated 4 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 3 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆110Updated 5 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated last month
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆88Updated 8 months ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆77Updated 4 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆53Updated 3 months ago