stPlus: reference-based enhancement of spatial transcriptomics
☆20Jan 6, 2024Updated 2 years ago
Alternatives and similar repositories for stPlus
Users that are interested in stPlus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep convolutional neural network for the accurate prediction of silencers☆16May 23, 2023Updated 3 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated last year
- Single-cell epigenomic data annotation via supervised non-linear embedding☆24Apr 14, 2022Updated 4 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- ☆29Jan 4, 2024Updated 2 years ago
- ☆15Aug 9, 2023Updated 2 years ago
- A foundation model for single-cell epigenomic data☆64Jun 3, 2026Updated last week
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated last year
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆13Mar 1, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆368Jul 1, 2025Updated 11 months ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- javaweb课程设计大作业，教学课后辅导交流系统☆16May 15, 2019Updated 7 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- ☆14Jan 25, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated last year
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆25Feb 28, 2026Updated 3 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆26Jan 31, 2026Updated 4 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 2 months ago
- EDF solves the multi-view features fusion problem by searching an optimal combination scheme of different basic fusion operators.☆11Jan 23, 2022Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated last year
- ☆11May 24, 2024Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 6 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Dec 1, 2021Updated 4 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- Sparse Convolutional Denoising Autoencoders for Genotype Imputation☆14Aug 23, 2019Updated 6 years ago
- A study of performance of optimal transport.☆10Jul 4, 2020Updated 5 years ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14May 21, 2026Updated 3 weeks ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆23Nov 25, 2025Updated 6 months ago