xy-chen16 / EpiAnno
Single-cell epigenomic data annotation via supervised non-linear embedding
☆22Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for EpiAnno
- ☆28Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆67Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- a unified single-cell data integration framework by optimal transport☆31Updated last month
- ☆72Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- ☆59Updated last year
- stPlus: reference-based enhancement of spatial transcriptomics☆18Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆64Updated 6 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆17Updated last month
- The benchmarking of spatial transcriptomics deconvolution methods☆23Updated last year
- ☆25Updated 5 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆38Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆71Updated 5 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 4 months ago
- ☆15Updated last month
- ☆28Updated 2 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆46Updated last year
- overview of spatial datasets☆69Updated 9 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆29Updated 7 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆63Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆16Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- ☆49Updated 3 months ago
- ☆44Updated last year
- Identify spatial domain☆59Updated last year