Alternatives and similar repositories for EpiAnno

Users that are interested in EpiAnno are comparing it to the libraries listed below

• QuKunLab / SPACEL
  ☆57Updated 10 months ago
• SydneyBioX / scJoint
  ☆59Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆65Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 3 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆42Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• ml4bio / CLEAR
  CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
  ☆33Updated 2 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆66Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆72Updated 3 years ago
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆46Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• QuKunLab / MultiomeBenchmarking
  ☆44Updated 3 months ago
• zpliulab / GENELink
  ☆31Updated 2 years ago
• xy-chen16 / stPlus
  stPlus: reference-based enhancement of spatial transcriptomics
  ☆18Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆35Updated 11 months ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 8 months ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• QuKunLab / SpatialBenchmarking
  ☆119Updated 2 years ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated 11 months ago
• bm2-lab / scMVP
  ☆30Updated last month
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆33Updated 4 years ago
• xianglin226 / scMDC
  Single Cell Multi-omics deep clustering
  ☆27Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 10 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago