A collection of materials used in Undergraduate Bioinformatics Club (UBIC) workshops at UCSD.
☆50Feb 19, 2026Updated 5 months ago
Alternatives and similar repositories for UBIC-Workshops
Users that are interested in UBIC-Workshops are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 28, 2019Updated 6 years ago
- Course on analysis of NGS data (RNA-Seq. and ATAC-Seq.) using Galaxy☆15May 24, 2021Updated 5 years ago
- ☆25Nov 14, 2025Updated 9 months ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- Pawsey workshop: containers for bioinformatics☆21Dec 3, 2018Updated 7 years ago
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- ☆11Updated this week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Transcription Factor Enrichment Analysis☆37Apr 10, 2026Updated 4 months ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated last month
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆14Jun 21, 2022Updated 4 years ago
- ☆13Jun 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- example of dynamic select component pairs in payload 3 cms☆13Jan 9, 2025Updated last year
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆201Jul 20, 2022Updated 4 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 12 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated last year
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- WARNING: This repository is no longer maintained ⚠️ This repository will not be updated. The repository will be kept available in read-on…☆11Nov 15, 2017Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- alphafold3 architecture step by step walkthrough.☆236Jul 31, 2026Updated 2 weeks ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆19Updated this week
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 11 months ago
- repository for the single cell RNA-Seq workshop☆31Apr 20, 2021Updated 5 years ago
- Pipeline for transcriptome de novo assembly☆12Mar 1, 2018Updated 8 years ago
- An interactive course on learning genomics/bioinformatics tasks in Linux.☆45Mar 21, 2026Updated 4 months ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- ☆12Oct 28, 2021Updated 4 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- workshop website on readthedocs☆23Jun 1, 2026Updated 2 months ago
- An R package to analyze roll distributions☆16Aug 6, 2021Updated 5 years ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆16Aug 6, 2026Updated last week
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆15May 29, 2026Updated 2 months ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated 11 months ago
- EBI cancer workshop course materials☆21May 9, 2022Updated 4 years ago