xihaoli / STAARLinks
An R package for performing STAAR procedure in whole-genome sequencing studies
☆95Updated 9 months ago
Alternatives and similar repositories for STAAR
Users that are interested in STAAR are comparing it to the libraries listed below
Sorting:
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 5 months ago
- QTL Discovery using Annotations☆28Updated 2 years ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated 2 months ago
- Genetics ToolboX R package☆32Updated 5 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- ☆35Updated 2 years ago
- Sequence kernel association test (SKAT)☆52Updated 3 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 5 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- R package for quality control of plink genetic datasets☆59Updated this week
- Main ricopili repo for public releases☆50Updated 7 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 weeks ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- ☆16Updated 4 years ago
- ☆23Updated 2 years ago
- Genotype-based Prediction (GenoPred)☆75Updated 2 weeks ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- LDlinkR☆62Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Updated last month
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- Visualization of Colocalization Between eQTL and GWAS Data☆86Updated 3 years ago