xihaoli / STAARLinks
An R package for performing STAAR procedure in whole-genome sequencing studies
☆95Updated 8 months ago
Alternatives and similar repositories for STAAR
Users that are interested in STAAR are comparing it to the libraries listed below
Sorting:
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- QTL Discovery using Annotations☆27Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 4 months ago
- Colocalization analysis of genetic association signals☆53Updated 4 months ago
- Every Gene Ever Annotated in published GWAS☆49Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- Main ricopili repo for public releases☆50Updated 6 months ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated 2 months ago
- R package for quality control of plink genetic datasets☆59Updated last week
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆52Updated last week
- ☆23Updated 2 years ago
- Genotype-based Prediction (GenoPred)☆74Updated this week
- Scripts for implementing the Tractor pipeline☆51Updated last month
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 5 months ago
- ☆35Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Development for SAIGE and SAIGE-GENE(+)☆84Updated last month
- Manhattan++☆28Updated last year
- ☆44Updated 4 months ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 3 weeks ago
- causal TWAS (cTWAS)☆46Updated last month
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago