Alternatives and similar repositories for STAAR

Users that are interested in STAAR are comparing it to the libraries listed below

• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆37Updated last week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 3 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆63Updated 7 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 3 weeks ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 3 weeks ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆51Updated 4 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated 2 weeks ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆29Updated last year
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 10 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆51Updated 3 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated last week
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆23Updated 4 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated last week
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆45Updated 3 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• weizhou0 / GATE
  ☆22Updated last year