xihaoli / STAARpipelineSummary
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
☆10Updated 5 months ago
Alternatives and similar repositories for STAARpipelineSummary:
Users that are interested in STAARpipelineSummary are comparing it to the libraries listed below
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆63Updated 3 weeks ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated 4 months ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- A curated list of monogenic epilepsy genes☆13Updated 3 weeks ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated last week
- methods for functional summary-based imputation☆81Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆43Updated this week
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 5 months ago
- Fast, integrative fine mapping with functional data☆57Updated 5 years ago
- ☆26Updated 4 years ago
- ☆20Updated 2 years ago
- Sequence kernel association test (SKAT)☆48Updated 2 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 9 years ago
- Burden testing against public controls☆50Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated 2 weeks ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 6 months ago
- Cross-population polygenic prediction☆79Updated 4 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆52Updated last year
- ☆34Updated 4 years ago
- Colocalization analysis of genetic association signals☆51Updated 4 months ago
- Cross-population fine-mapping☆34Updated 4 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 8 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- Development for SAIGE and SAIGE-GENE(+)☆75Updated 3 weeks ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆44Updated this week
- ☆40Updated 7 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 8 months ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆28Updated 3 years ago