Alternatives and similar repositories for STAARpipeline

Users that are interested in STAARpipeline are comparing it to the libraries listed below

• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆67Updated 2 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆49Updated 3 weeks ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆30Updated 7 months ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆77Updated this week
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆59Updated 5 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆51Updated 2 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 7 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆46Updated 3 months ago
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆25Updated 2 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• nloyfer / UXM_deconv
  ☆44Updated 2 years ago
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆53Updated 4 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆40Updated 7 months ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 5 months ago
• qtltools / qtltools
  A complete tool set for molecular QTL discovery and analysis
  ☆55Updated last year
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆86Updated 7 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆65Updated 6 years ago
• fhormoz / caviar
  ☆60Updated 3 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• hartwigmedical / pipeline5
  ☆21Updated this week
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆72Updated 3 weeks ago