This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
☆20Jun 11, 2020Updated 6 years ago
Alternatives and similar repositories for Anchor
Users that are interested in Anchor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Sep 1, 2024Updated last year
- ☆17Sep 16, 2021Updated 4 years ago
- ☆14Jun 14, 2019Updated 7 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Mar 18, 2018Updated 8 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆114Nov 3, 2025Updated 8 months ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆21Jun 2, 2020Updated 6 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- ☆12May 26, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Dec 11, 2024Updated last year
- IDR☆31Mar 30, 2023Updated 3 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆32May 20, 2025Updated last year
- Supervised and unsupervised self-organising maps☆13Jun 22, 2026Updated last month
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Jun 22, 2026Updated last month
- ☆11Feb 16, 2021Updated 5 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Jul 11, 2023Updated 3 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- ☆19Aug 20, 2018Updated 7 years ago
- TF MOtif Discovery from Importance SCOres☆186May 13, 2026Updated 2 months ago
- An implementation of vConv layer.☆11Apr 28, 2021Updated 5 years ago
- ☆11Jun 9, 2023Updated 3 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Jun 15, 2026Updated last month
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- ☆12Dec 12, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- ☆22Feb 5, 2025Updated last year
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago