dmnfarrell / pybiovizLinks
bioinformatics visualization tools with pyviz/bokeh
☆20Updated 2 years ago
Alternatives and similar repositories for pybioviz
Users that are interested in pybioviz are comparing it to the libraries listed below
Sorting:
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 6 months ago
- Pandas DataFrames for phylogenetics☆75Updated 4 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Updated last year
- Python interface to amino acid properties and IEDB☆57Updated last year
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Computational biology utility scripts☆19Updated 9 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Updated 9 years ago
- Align sequences and then parse features.☆17Updated 3 months ago
- Python package to plot sequence logos☆29Updated 2 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- Python package to query and analyse UniProt☆25Updated 5 years ago
- A client for the Ensembl REST API written in the Python programming language☆28Updated 2 months ago
- SRA python tools☆11Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 10 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 months ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- Flexible analysis of high-content CRISPR screening☆31Updated 5 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated last month
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago