thucombio / deepnet-rbp

Related projects ⓘ

Alternatives and complementary repositories for deepnet-rbp

• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆34Updated last year
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• zhangyan32 / HiCPlus
  ☆30Updated 5 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated last year
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 4 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆22Updated 2 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆41Updated 4 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆52Updated 5 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆46Updated last year
• bioFAM / slalom
  ☆28Updated last year
• hiranumn / DeepATACseq
  Repository for the code for DeepATAC project presented at WCB workshop in ICML2017
  ☆22Updated 7 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• yakirr / sldp
  Signed LD profile regression code
  ☆17Updated 2 years ago
• openvax / vaxrank
  Ranked vaccine peptides for personalized cancer immunotherapy
  ☆53Updated last month
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆31Updated 4 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆31Updated 4 years ago
• joan-smith / genomic-features-survival
  Scripts supporting identification of genomic features affecting survival time in cancer
  ☆12Updated 5 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• babelomics / babelomics
  ☆41Updated 6 years ago
• gitter-lab / prmf
  Pathway-Regularized Matrix Factorization
  ☆12Updated 4 years ago
• davek44 / utility
  Computational biology utility scripts
  ☆19Updated 4 months ago
• broadinstitute / scRNA-Seq
  ☆12Updated last year
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆41Updated 2 months ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 4 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago