TsuPeiChiu / DNAshapeRLinks
R package for high-throughput DNA shape predictions and feature encoding
☆19Updated 4 years ago
Alternatives and similar repositories for DNAshapeR
Users that are interested in DNAshapeR are comparing it to the libraries listed below
Sorting:
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Updated 6 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 7 months ago
- ☆26Updated 5 years ago
- ☆42Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Updated 8 years ago
- ☆20Updated 8 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 9 months ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Updated 3 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆35Updated 9 years ago