flatironinstitute / catvaeLinks
Categorical Variational Autoencoders
☆24Updated 3 years ago
Alternatives and similar repositories for catvae
Users that are interested in catvae are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- ☆14Updated last year
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Updated 4 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Updated 3 years ago
- ☆33Updated 3 years ago
- ☆16Updated last year
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆66Updated last year
- ☆24Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated 11 months ago
- ☆21Updated 8 years ago
- Jax code for functional genomics ML☆14Updated 5 months ago
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- ☆10Updated 5 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- Pyro models of SARS-CoV-2 variants☆78Updated last year
- A library to simulate single-cell data☆2Updated 2 years ago
- ☆26Updated 4 years ago