flatironinstitute / catvaeLinks
Categorical Variational Autoencoders
☆24Updated 3 years ago
Alternatives and similar repositories for catvae
Users that are interested in catvae are comparing it to the libraries listed below
Sorting:
- Fast Inference of Networks from Directed Regulations☆22Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 2 months ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- ☆33Updated 4 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- ☆17Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- Jax code for functional genomics ML☆14Updated 9 months ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- ☆20Updated 4 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Updated 3 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆12Updated last year
- ☆10Updated 5 years ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago