sequencing / isaac_variant_callerLinks
This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
☆37Updated 8 years ago
Alternatives and similar repositories for isaac_variant_caller
Users that are interested in isaac_variant_caller are comparing it to the libraries listed below
Sorting:
- Isaac Genome Alignment Software☆36Updated 10 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 7 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 8 years ago
- ☆82Updated 6 years ago
- The Platinum Genomes Truthset☆88Updated 7 years ago
- GenomicsDB☆111Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- NGS Language Bindings☆119Updated last year
- ABRA2☆92Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- A genotype query interface.☆136Updated 4 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆183Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆87Updated 10 months ago
- Platypus Variant Caller☆108Updated last year
- MuTect -- Accurate and sensitive cancer mutation detection☆100Updated 2 years ago
- ☆95Updated 2 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago