wabdelmoula / msiPL
Python Implementation of the msiPL by Abdelmoula et al.
☆26Updated 3 years ago
Alternatives and similar repositories for msiPL:
Users that are interested in msiPL are comparing it to the libraries listed below
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated last month
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Updated 3 years ago
- Mass spectrometry imaging toolbox☆52Updated 4 months ago
- A parser to read .imzML files with python☆40Updated 5 months ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆18Updated 8 years ago
- Software for the analysis and interactive exploration of spectral imaging data☆30Updated 4 years ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆49Updated 3 weeks ago
- Methods for Image-Based Cell Profiling☆50Updated 11 months ago
- CellProfiler tutorial pipelines and images☆93Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆75Updated 3 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆23Updated last year
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆48Updated 2 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last week
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated 3 months ago
- ☆60Updated 2 months ago
- Evaluating batch correction methods for image-based cell profiling☆12Updated 3 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆54Updated last week
- MAss spectra alignment tool for MSI data☆19Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- modular & open DIA search☆67Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated last month
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆67Updated last week
- Infrastructure of AlphaX ecosystem☆37Updated 2 weeks ago
- Batch effects removal method based on deep autoencoder and adversarial learning☆22Updated 3 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago