Alternatives and similar repositories for msiPL

Users that are interested in msiPL are comparing it to the libraries listed below

• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated last week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 10 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated 2 months ago
• AlanRace / SpectralAnalysis
  Software for the analysis and interactive exploration of spectral imaging data
  ☆31Updated 4 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆118Updated 8 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 2 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆50Updated 3 weeks ago
• LaRoccaRaphael / MSI_recalibration
  Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data
  ☆11Updated 3 years ago
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆96Updated last year
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆21Updated last month
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 years ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆40Updated 8 months ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆133Updated 4 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆120Updated this week
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆179Updated this week
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 3 years ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆61Updated 3 weeks ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆97Updated 2 weeks ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆63Updated 5 months ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆54Updated 4 years ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆17Updated 2 weeks ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆12Updated last month
• michaellee1 / CellSeg
  ☆23Updated 2 years ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆59Updated 7 months ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago