wabdelmoula / msiPLLinks
Python Implementation of the msiPL by Abdelmoula et al.
☆26Updated 4 years ago
Alternatives and similar repositories for msiPL
Users that are interested in msiPL are comparing it to the libraries listed below
Sorting:
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆69Updated 2 weeks ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆52Updated this week
- A parser to read .imzML files with python☆46Updated last year
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated 3 weeks ago
- CellProfiler tutorial pipelines and images☆98Updated last week
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- Software for the analysis and interactive exploration of spectral imaging data☆31Updated 5 years ago
- Python package for processing image-based profiling data☆126Updated last week
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Updated 3 years ago
- Morphological profiling using deep learning☆121Updated last year
- Mass spectrometry imaging toolbox☆65Updated 3 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- collection of mass spectrometry imaging workflows☆17Updated 5 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Batch effects removal method based on deep autoencoder and adversarial learning☆24Updated 10 months ago
- Cell Painting Gallery☆112Updated last week
- Evaluating batch correction methods for image-based cell profiling☆14Updated 2 months ago
- CytoData 2016 – origin story☆18Updated 8 years ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- ☆66Updated 8 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- File format for 96-well plate layouts.☆23Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- Python Flow Cytometry Calibration Library☆52Updated 6 months ago
- Images and other data from the JUMP Cell Painting Consortium☆177Updated this week