Alternatives and similar repositories for msiPL

Users that are interested in msiPL are comparing it to the libraries listed below

• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 3 years ago
• AlanRace / SpectralAnalysis
  Software for the analysis and interactive exploration of spectral imaging data
  ☆31Updated 5 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 3 years ago
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆52Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated 2 months ago
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆21Updated last month
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆119Updated 11 months ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆46Updated 11 months ago
• LaRoccaRaphael / MSI_recalibration
  Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data
  ☆11Updated 3 years ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆96Updated 2 months ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆164Updated 2 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆69Updated 2 weeks ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆15Updated 4 months ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 2 months ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆55Updated 5 years ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆65Updated 8 months ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆101Updated last year
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated last week
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated 9 months ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆14Updated 7 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆21Updated 8 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆104Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 3 weeks ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆64Updated last week
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago