dpeerlab / PhenoGraphLinks
Subpopulation detection in high-dimensional single-cell data
☆69Updated 4 years ago
Alternatives and similar repositories for PhenoGraph
Users that are interested in PhenoGraph are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 3 weeks ago
- Subpopulation detection in high-dimensional single-cell data☆138Updated 4 years ago
- Batch balanced KNN☆165Updated last year
- Spatial Single-Cell Analysis Toolkit☆92Updated 2 weeks ago
- ☆36Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆67Updated 2 years ago
- ☆53Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 3 months ago
- ☆52Updated 4 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆81Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆47Updated 3 years ago
- A pixel classification based multiplexed image segmentation pipeline☆96Updated last year
- data and model repository for single-cell data☆135Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 7 months ago
- ☆27Updated 9 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆88Updated 4 months ago
- ☆26Updated 5 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- ☆100Updated 2 years ago
- Scanpy use cases.☆85Updated 4 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- ☆130Updated last year
- Nonnegative spatial factorization for multivariate count data☆58Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆224Updated last week