LaRoccaRaphael / MSI_recalibrationLinks
Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data
☆11Updated 3 years ago
Alternatives and similar repositories for MSI_recalibration
Users that are interested in MSI_recalibration are comparing it to the libraries listed below
Sorting:
- A parser to read .imzML files with python☆40Updated 7 months ago
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated last week
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- MAss spectra alignment tool for MSI data☆19Updated 3 years ago
- Infrastructure of AlphaX ecosystem☆38Updated 3 weeks ago
- Python Implementation of the msiPL by Abdelmoula et al.☆26Updated 3 years ago
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago
- collection of mass spectrometry imaging workflows☆11Updated 3 weeks ago
- Mass spectrometry imaging toolbox☆58Updated 6 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆50Updated last week
- Evaluating batch correction methods for image-based cell profiling☆14Updated 5 months ago
- rMSI processing methods using C++☆11Updated 3 years ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆20Updated 8 years ago
- Find profile pairs and compute metrics between them.☆17Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated this week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- Imputing proteomics data using deep learning models☆22Updated 3 weeks ago
- ☆63Updated 4 months ago
- Python package for processing image-based profiling data☆117Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆69Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 2 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 2 months ago
- A pipeline to transform images into valuable analysis items☆13Updated last week
- ☆37Updated 3 months ago
- Software for the analysis and interactive exploration of spectral imaging data☆31Updated 4 years ago