LaRoccaRaphael / MSI_recalibration

Related projects ⓘ

Alternatives and complementary repositories for MSI_recalibration

• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆20Updated 3 weeks ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆32Updated 2 weeks ago
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 2 years ago
• horvatovichlab / MSIWarp
  MAss spectra alignment tool for MSI data
  ☆18Updated 2 years ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆19Updated last year
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆9Updated last month
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆56Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated last year
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆48Updated 8 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆74Updated this week
• MannLabs / scPortrait
  ☆28Updated this week
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆42Updated 3 weeks ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆55Updated last week
• yuqiyuqitan / SPACEc
  ☆18Updated this week
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆89Updated 4 months ago
• BodenmillerGroup / ImagingWorkshop2023
  Central repository for the Multiplexed Tissue Imaging Workshop 2023.
  ☆10Updated last year
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆68Updated this week
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆48Updated this week
• prafols / rMSIproc
  rMSI processing methods using C++
  ☆10Updated 2 years ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆35Updated 4 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆41Updated 4 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆70Updated 2 weeks ago
• MannLabs / alphadia
  modular & open DIA search
  ☆55Updated this week
• KerenLab / CellSighter
  ☆29Updated 11 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆76Updated 2 weeks ago
• uhlerlab / cross-modal-autoencoders
  ☆53Updated 2 years ago
• tmonjo / DeepSpaCE
  ☆21Updated 2 years ago
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆31Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆25Updated 3 weeks ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆84Updated 3 weeks ago