alexandrovteam / pyimzMLLinks
A parser to read .imzML files with python
☆40Updated 8 months ago
Alternatives and similar repositories for pyimzML
Users that are interested in pyimzML are comparing it to the libraries listed below
Sorting:
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆50Updated 3 weeks ago
- File format for 96-well plate layouts.☆23Updated last year
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆20Updated 8 years ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated last month
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated last week
- MS/MS prediction for peptides☆23Updated 4 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated 2 weeks ago
- Python package for processing image-based profiling data☆120Updated this week
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆48Updated 2 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆14Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆36Updated last year
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 3 months ago
- Cell Painting and other pipelines from the Imaging Platform☆19Updated 5 months ago
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 6 months ago
- Mass spectrometry imaging toolbox☆59Updated 6 months ago
- Evaluating batch correction methods for image-based cell profiling☆14Updated 6 months ago
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- ☆54Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆26Updated 2 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last month
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- The complete FlowSOM package known from R, now available in Python!☆22Updated this week
- Software for the analysis and interactive exploration of spectral imaging data☆31Updated 4 years ago
- ☆38Updated 4 months ago
- ☆62Updated last year