Alternatives and similar repositories for pyimzML

Users that are interested in pyimzML are comparing it to the libraries listed below

• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆55Updated this week
• alexandrovteam / pySM
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆20Updated 9 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 3 years ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆40Updated last month
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆21Updated last month
• bigbio / qpx
  qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment
  ☆14Updated last week
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆66Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆78Updated 2 weeks ago
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆39Updated last year
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆28Updated last month
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated this week
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated 2 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 5 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆21Updated 4 months ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆20Updated 2 weeks ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆35Updated 7 months ago
• AlanRace / imzMLConverter
  Tool for converting mass spectrometry data to the imzML format.
  ☆18Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆22Updated 10 months ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆54Updated last month
• gtluu / timsconvert
  ☆44Updated 8 months ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 4 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆93Updated this week
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year