Alternatives and similar repositories for pyimzML:

Users that are interested in pyimzML are comparing it to the libraries listed below

• alexandrovteam / pySM
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆18Updated 8 years ago
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆49Updated last month
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆21Updated last week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated 3 weeks ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated 2 weeks ago
• gtluu / timsconvert
  ☆37Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆68Updated last week
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆55Updated 4 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆56Updated 6 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆23Updated last year
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• jessegmeyerlab / proteomics-tutorial
  ☆59Updated last year
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆37Updated 3 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 2 months ago
• LaRoccaRaphael / MSI_recalibration
  Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data
  ☆11Updated 3 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 months ago
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆34Updated 10 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆69Updated 2 weeks ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated last month
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆45Updated this week
• RasmussenLab / pimms
  Imputing proteomics data using deep learning models
  ☆21Updated this week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated 3 weeks ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 11 months ago
• horvatovichlab / MSIWarp
  MAss spectra alignment tool for MSI data
  ☆19Updated 2 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆54Updated 2 weeks ago
• prafols / rMSIproc
  rMSI processing methods using C++
  ☆10Updated 3 years ago