A parser to read .imzML files with python
☆52Nov 4, 2024Updated last year
Alternatives and similar repositories for pyimzML
Users that are interested in pyimzML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆21Nov 15, 2016Updated 9 years ago
- Tool for converting mass spectrometry data to the imzML format.☆20Jan 21, 2022Updated 4 years ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆61Updated this week
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆12Dec 22, 2021Updated 4 years ago
- ☆14Dec 27, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mass spectrometry imaging toolbox☆81Sep 17, 2026Updated last month
- Software for the analysis and interactive exploration of spectral imaging data☆33Aug 25, 2020Updated 6 years ago
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆24Apr 17, 2026Updated 6 months ago
- Tools for analysis of Mass Spectrometry data using the Wasserstein metric☆19Jul 14, 2026Updated 3 months ago
- Thermo MSFileReader Python bindings☆72May 4, 2021Updated 5 years ago
- Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline☆12Jul 6, 2023Updated 3 years ago
- Vignettes for Cardinal3 paper☆11Feb 20, 2023Updated 3 years ago
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Apr 16, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Jul 10, 2022Updated 4 years ago
- ☆15Aug 17, 2023Updated 3 years ago
- MAss spectra alignment tool for MSI data☆20Jun 6, 2022Updated 4 years ago
- Libraries for fine isotopic structure calculator.☆48Oct 6, 2026Updated last week
- Interfacing R's Spectra package with the Python world.☆13May 12, 2026Updated 5 months ago
- ☆19Nov 21, 2022Updated 3 years ago
- Workflow for LC-MS feature analysis and spatial mapping☆20Jul 16, 2018Updated 8 years ago
- R MSI Tools☆15Nov 29, 2021Updated 4 years ago
- collection of mass spectrometry imaging workflows☆22Mar 17, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Out-of-core statistical computing and signal processing☆60Jun 27, 2026Updated 3 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 7 months ago
- SPIKE a collaborative development for a FT-spectroscopy processing program.☆21Updated this week
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Python Implementation of the msiPL by Abdelmoula et al.☆26Jul 11, 2021Updated 5 years ago
- ☆10Apr 7, 2026Updated 6 months ago
- Defined MRM transitions from untargeted metabolomics data☆12Nov 13, 2023Updated 2 years ago
- ☆26Jul 27, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Toolbox for the processing and analysis of MALDI-MSI data☆16Sep 10, 2025Updated last year
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Sep 28, 2026Updated 3 weeks ago
- Quantitative Analysis of Mass Spectrometry Data☆68Oct 20, 2025Updated 11 months ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆52Apr 9, 2026Updated 6 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆70Sep 3, 2026Updated last month
- A "fairly fast" ISOtope PAttern Calculator for Python☆13Sep 27, 2023Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 3 years ago