A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.
☆25Oct 21, 2021Updated 4 years ago
Alternatives and similar repositories for st_gridnet
Users that are interested in st_gridnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for analyses in the STARsolo manuscript☆12May 25, 2021Updated 5 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 6 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- An R package to write logs.☆15Aug 6, 2026Updated 2 months ago
- International BioHackathon Directory of Events, Projects and Communities☆12Jul 7, 2026Updated 3 months ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- ggCorpIdent: A package for ggplot2 graphics in corporate design with custom fonts, colors and logo.☆13Apr 4, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Mar 15, 2024Updated 2 years ago
- Jack's dotfiles☆16Jun 11, 2024Updated 2 years ago
- ☆15May 19, 2022Updated 4 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- Examples and Tutorials for using EASE with Python - prepared for EclipseCon France 2016☆10May 27, 2021Updated 5 years ago
- Code for ACL 2025 "Focus on What Matters: Enhancing Medical Vision-Language Models with Automatic Attention Alignment Tuning"☆12Dec 6, 2025Updated 10 months ago
- ICLR 2021 Submission☆12Nov 15, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆33Sep 6, 2023Updated 3 years ago
- Causal inference in non-linear dynamics systems☆16Jun 20, 2017Updated 9 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 7 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Sep 2, 2026Updated last month
- Course page for comp790-166 computational biology in spring 2022☆11Apr 25, 2022Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆104Jul 4, 2024Updated 2 years ago
- Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release☆19Jul 4, 2019Updated 7 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆20Mar 30, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 记录日常学习和开发遇到的问题。欢迎评论交流：）☆14Oct 28, 2023Updated 2 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- ☆13Feb 2, 2021Updated 5 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 5 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- Facilitating the use of Deep Visual Proteomics☆18Sep 16, 2026Updated last month