A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.
☆25Oct 21, 2021Updated 4 years ago
Alternatives and similar repositories for st_gridnet
Users that are interested in st_gridnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- ☆17Apr 27, 2023Updated 3 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated last month
- An R package to write logs.☆15Mar 6, 2026Updated 4 months ago
- International BioHackathon Directory of Events, Projects and Communities☆12Jul 7, 2026Updated 3 weeks ago
- Glioblastoma Surgery Imaging - Reporting And Data System (GSI-RADS).☆20May 30, 2022Updated 4 years ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Mar 15, 2024Updated 2 years ago
- ☆16May 13, 2022Updated 4 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- Sage Bionetworks derived standards for annotating content in Synapse.☆16Jul 2, 2026Updated 3 weeks ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Causal inference in non-linear dynamics systems☆16Jun 20, 2017Updated 9 years ago
- Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release☆19Jul 4, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- My setup and config files.☆18Aug 18, 2017Updated 8 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆103Jul 4, 2024Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- 记录日常学习和开发遇到的问题。欢迎评论交流:)☆14Oct 28, 2023Updated 2 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆102Apr 25, 2026Updated 3 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆46Mar 13, 2026Updated 4 months ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 9 years ago
- ☆155Mar 20, 2026Updated 4 months ago
- Making it easy to talk to GitHub from R☆19Jun 18, 2021Updated 5 years ago