A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.
☆25Oct 21, 2021Updated 4 years ago
Alternatives and similar repositories for st_gridnet
Users that are interested in st_gridnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 7 months ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 6 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 5 months ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- ☆14Dec 24, 2021Updated 4 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated 2 months ago
- International BioHackathon Directory of Events, Projects and Communities☆12Jul 7, 2026Updated 2 months ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- Glioblastoma Surgery Imaging - Reporting And Data System (GSI-RADS).☆20May 30, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- ☆10Mar 15, 2024Updated 2 years ago
- ggCorpIdent: A package for ggplot2 graphics in corporate design with custom fonts, colors and logo.☆13Apr 4, 2019Updated 7 years ago
- ☆15May 19, 2022Updated 4 years ago
- ☆16May 13, 2022Updated 4 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- ICLR 2021 Submission☆12Nov 15, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Sage Bionetworks derived standards for annotating content in Synapse.☆16Jul 2, 2026Updated 2 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release☆19Jul 4, 2019Updated 7 years ago
- My setup and config files.☆18Aug 18, 2017Updated 9 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆103Jul 4, 2024Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated this week
- Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)☆21Aug 10, 2026Updated 3 weeks ago
- 记录日常学习和开发遇到的问题。欢迎评论交流:)☆14Oct 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Nov 15, 2018Updated 7 years ago
- ☆14Feb 2, 2021Updated 5 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆103Apr 25, 2026Updated 4 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆54Mar 24, 2026Updated 5 months ago
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 7 months ago