Alternatives and similar repositories for metaspace

Users that are interested in metaspace are comparing it to the libraries listed below

• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆48Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 6 months ago
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆44Updated last month
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• bigbio / qpx
  qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment
  ☆14Updated last week
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated this week
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 5 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 3 months ago
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated 3 weeks ago
• alexandrovteam / pySM
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆20Updated 9 years ago
• bittremieuxlab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆47Updated 8 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆39Updated last year
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆51Updated 4 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 10 months ago
• eugenemel / maven
  Maven GUI: Metabolomics Analysis and Visualization Engine
  ☆22Updated 3 weeks ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆26Updated last week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆50Updated 2 years ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆66Updated last month
• alexandrovteam / curatr
  ☆14Updated 3 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆79Updated last month
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated 2 weeks ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆24Updated this week