Alternatives and similar repositories for metaspace:

Users that are interested in metaspace are comparing it to the libraries listed below

• alexandrovteam / pySM
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆18Updated 8 years ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆32Updated 2 months ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆46Updated last month
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆23Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆32Updated 8 months ago
• gtluu / timsconvert
  ☆34Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 8 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• prafols / rMSIproc
  rMSI processing methods using C++
  ☆10Updated 3 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• MannLabs / alphadia
  modular & open DIA search
  ☆57Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated this week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated last month
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆42Updated 10 months ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated this week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated last week
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆39Updated 7 months ago
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆47Updated 3 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• RASpicer / MetabolomicsTools
  ☆55Updated 3 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated 3 weeks ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆30Updated 8 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆35Updated 2 years ago
• XiaoyangSu / AccuCor
  ☆16Updated 5 months ago
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆20Updated 2 months ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 6 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆43Updated this week