deepimagej / pydeepimagejLinks
Python package to export tensorflow models as DeepImageJ bundled models
☆17Updated 2 years ago
Alternatives and similar repositories for pydeepimagej
Users that are interested in pydeepimagej are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 9 months ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 4 months ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 4 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- ☆25Updated 4 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- QuPath extension for Cellsparse☆18Updated last month
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 2 years ago
- Template to help create a new QuPath extension☆19Updated last month
- Data processing tools associated with deepcell☆11Updated last year
- Robust quad-tree based registration on whole slide images☆19Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆27Updated 3 years ago
- computer vision models for single-cell phenotyping☆51Updated this week
- Cloud-based data annotation tools for biological images☆81Updated last year
- Python program to generate NetworkX graphs from segmented images.☆15Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 11 months ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 5 years ago
- ☆33Updated last year
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 4 years ago