deepimagej / pydeepimagejLinks
Python package to export tensorflow models as DeepImageJ bundled models
☆17Updated 2 years ago
Alternatives and similar repositories for pydeepimagej
Users that are interested in pydeepimagej are comparing it to the libraries listed below
Sorting:
- ☆25Updated 4 years ago
- ☆23Updated 2 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 10 months ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 6 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- simple package for augmentation of n-dimensional arrays☆34Updated last year
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Microsopic Image Analyzer (MIA)☆28Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 4 years ago
- ☆32Updated last week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- Piecewise alignment for layers of mosaics☆28Updated last month
- The ImageJ plugin to run deep-learning models☆97Updated 2 weeks ago
- ☆18Updated 2 years ago
- QuPath extension for Cellsparse☆19Updated 3 months ago
- Framework for image and flow cytometry analysis☆28Updated last week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆16Updated last month
- Template to help create a new QuPath extension☆20Updated last month
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- Robust quad-tree based registration on whole slide images☆19Updated 4 months ago
- Foundation Model for Multiplex Spatial Proteomic Images☆69Updated 2 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆28Updated 3 years ago
- collection of mass spectrometry imaging workflows☆13Updated 2 months ago