Alternatives and similar repositories for pydeepimagej:

Users that are interested in pydeepimagej are comparing it to the libraries listed below

• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆13Updated last year
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 4 months ago
• michaellee1 / CellSeg
  ☆21Updated last year
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 7 months ago
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆16Updated 4 years ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆35Updated 2 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• funkelab / linajea
  ☆17Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆53Updated 2 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆35Updated this week
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆40Updated this week
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆29Updated last year
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆86Updated last week
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 5 months ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆55Updated 2 years ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆19Updated 7 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆19Updated last year
• MultimodalImagingCenter / MiC
  MiC is an ImageJ plugin to compare segmentation masks
  ☆17Updated 6 months ago
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆20Updated 3 weeks ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆44Updated 6 months ago
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆24Updated 9 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library using OpenCL
  ☆33Updated this week
• NEUBIAS / neubias-springer-book-2021
  The repository of NEUBIAS textbook 2021
  ☆10Updated 2 years ago
• kukionfr / VAMPIRE_open
  open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
  ☆25Updated 2 years ago
• hwanglab / TILs_Analysis
  Pan-cancer tils analysis study by Hongming Xu
  ☆13Updated 4 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 3 years ago