Alternatives and similar repositories for Cardinal

Users that are interested in Cardinal are comparing it to the libraries listed below

• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 2 weeks ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last week
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆109Updated last week
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆29Updated 11 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆71Updated 4 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated last year
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆147Updated this week
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆84Updated 3 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 4 months ago
• xleizi / easySCF
  ☆46Updated last week
• theislab / atlas-feature-selection-benchmark
  Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"
  ☆28Updated 7 months ago
• lamanno-epfl / uMAIA
  Toolbox for the processing and analysis of MALDI-MSI data
  ☆11Updated last month
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆50Updated 4 months ago
• SofieVG / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆65Updated last year
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated last week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated 2 weeks ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆109Updated 2 years ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 5 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• shooshtarilab / TMExplorer
  A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
  ☆19Updated 3 months ago
• bfurtwa / SCeptre
  SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
  ☆18Updated last year
• biodavidjm / artMS
  Analytical R Tools for Mass Spectrometry
  ☆14Updated this week
• symbioticMe / proBatch
  Tools for Batch Effects Diagnostics and Correction
  ☆17Updated 6 months ago
• ludvigla / semla
  ☆94Updated last month
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆97Updated 2 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 8 months ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆57Updated last year
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆19Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆38Updated 4 months ago