shntnu / cytomining-hackathon-wikiLinks
CytoData 2016 – origin story
☆18Updated 8 years ago
Alternatives and similar repositories for cytomining-hackathon-wiki
Users that are interested in cytomining-hackathon-wiki are comparing it to the libraries listed below
Sorting:
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Find profile pairs and compute metrics between them.☆20Updated 3 weeks ago
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- collection of mass spectrometry imaging workflows☆18Updated 5 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- ☆89Updated 2 weeks ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- The ImageJ plugin to run deep-learning models☆98Updated 3 weeks ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- ☆32Updated 3 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 3 months ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Lectures for a napari training course☆51Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Microsopic Image Analyzer (MIA)☆28Updated 3 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago