shntnu / cytomining-hackathon-wiki
CytoData 2016 – origin story
☆17Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for cytomining-hackathon-wiki
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆61Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆19Updated 2 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated last week
- Raw format to OME-TIFF converter☆49Updated last week
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆35Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆33Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- QuPath extension to interactively align images☆19Updated 3 months ago
- Methods for Image-Based Cell Profiling☆49Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- Toolbox for the analysis of smFISH images.☆57Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- MethodsJ2☆14Updated 2 years ago
- QuPath extension for Cellsparse☆15Updated 4 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆94Updated last year
- ☆19Updated last month
- ☆21Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆47Updated 2 months ago
- Community-contributed and experimental CellProfiler modules.☆58Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Lectures for a napari training course☆50Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago