CytoData 2016 – origin story
☆18Sep 15, 2017Updated 8 years ago
Alternatives and similar repositories for cytomining-hackathon-wiki
Users that are interested in cytomining-hackathon-wiki are comparing it to the libraries listed below
Sorting:
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Sep 19, 2018Updated 7 years ago
- Methods for Image-Based Cell Profiling☆51May 8, 2024Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated last week
- Python samples for Micro-Manager: image acquisition and microscope control system☆22Sep 26, 2019Updated 6 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated 11 months ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- ☆30Mar 15, 2021Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Feb 2, 2026Updated last month
- Morphological profiling using deep learning☆123Oct 19, 2024Updated last year
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆45Jun 18, 2024Updated last year
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- A python port of the Single Molecule Tools software by Adam Wollman, aka. ADEMSCode.☆11Updated this week
- Arduino Communication through Serial☆13Oct 11, 2023Updated 2 years ago
- nf-tencentcloud is a nextflow plugin designed to add Tencent Cloud Object storage and Tencent Healthcare Omics Platform executor adaptati…☆18Jul 7, 2025Updated 7 months ago
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 2 years ago
- ☆25Dec 15, 2025Updated 2 months ago
- Pure python/C++ micro-manager ecosystem☆46Updated this week
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆12Sep 21, 2017Updated 8 years ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆18Feb 24, 2026Updated last week
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- daoSPIM microscope project: software and hardware☆11Jul 6, 2023Updated 2 years ago
- some demo to show how to write imagepy plugin