shntnu / cytomining-hackathon-wikiLinks
CytoData 2016 – origin story
☆18Updated 8 years ago
Alternatives and similar repositories for cytomining-hackathon-wiki
Users that are interested in cytomining-hackathon-wiki are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆64Updated 2 years ago
- CellProfiler tutorial pipelines and images☆99Updated last week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- collection of mass spectrometry imaging workflows☆22Updated last week
- ☆32Updated 6 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆80Updated 6 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated 2 weeks ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆48Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- The repository of NEUBIAS textbook 2021☆11Updated 4 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated last month
- The ImageJ plugin to run deep-learning models☆97Updated 3 months ago
- Read and write life sciences file formats☆142Updated 8 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 4 years ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆166Updated 6 months ago