AlanRace / SpectralAnalysis
Software for the analysis and interactive exploration of spectral imaging data
☆30Updated 4 years ago
Alternatives and similar repositories for SpectralAnalysis:
Users that are interested in SpectralAnalysis are comparing it to the libraries listed below
- A parser to read .imzML files with python☆40Updated 5 months ago
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated last month
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Updated 3 years ago
- Tool for converting mass spectrometry data to the imzML format.☆14Updated 3 years ago
- Python Implementation of the msiPL by Abdelmoula et al.☆26Updated 3 years ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆18Updated 8 years ago
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆48Updated last week
- ☆11Updated 6 years ago
- rMSI processing methods using C++☆10Updated 3 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last week
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆49Updated 3 weeks ago
- MAss spectra alignment tool for MSI data☆19Updated 2 years ago
- Your Personal Assistant in Computational Bioimaging.☆40Updated 3 weeks ago
- ☆15Updated 4 years ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆56Updated last month
- Group-DIA, a software for analyzing multiple DIA data files☆13Updated 8 years ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆48Updated 2 weeks ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 6 months ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated 7 months ago
- ☆15Updated 5 years ago
- scGEAToolbox: Matlab toolbox for single-cell gene expression analyses☆26Updated this week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- Evaluating batch correction methods for image-based cell profiling☆12Updated 3 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 10 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago