Vince Buffalo's devnotes — ½ TIL, ½ notebook
☆116Feb 15, 2016Updated 10 years ago
Alternatives and similar repositories for devnotes
Users that are interested in devnotes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- commandline manipulation of genomic variants and NGS reads☆20Updated this week
- Curriculum Vitae☆14Sep 24, 2026Updated 3 weeks ago
- Flexible Bayesian inference of mutational signatures☆43Jan 30, 2023Updated 3 years ago
- Minor Variant Calling and Phasing Tools☆15Jan 13, 2022Updated 4 years ago
- A simple comment CSS for linking in R markdown☆11Dec 8, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Aug 16, 2016Updated 10 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 6 months ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated 3 months ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ☆11Jun 26, 2020Updated 6 years ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- Generate mutated sequence files from a reference genome.☆11Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated 11 months ago
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Good news everyone! You can have Futurama in your shell again.☆12Oct 8, 2017Updated 9 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- Provenance tracking for R.☆23Oct 30, 2018Updated 7 years ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 10 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Curriculum Development Hackathon on Reproducible Research using Jupyter Notebooks, to be held Jan 9-11 at BIDS in Berkeley, CA☆25Jan 11, 2017Updated 9 years ago
- Tutorial on programming or "big data"/bioinformatics☆32Jan 5, 2018Updated 8 years ago
- ARCHIVED checkers☆49May 10, 2022Updated 4 years ago
- R package: dirdf - Extracts Metadata from Directory and File Names☆56Mar 25, 2021Updated 5 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- My dotfiles, with simple install script.☆53Mar 2, 2026Updated 7 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- BAM Statistics, Feature Counting and Annotation☆155Oct 2, 2026Updated 2 weeks ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated this week
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- online notebooks for a review of genome sketching☆60Sep 23, 2019Updated 7 years ago
- ☆13Oct 13, 2021Updated 5 years ago