A sensitive and fast tool for circular RNA detection from RNA-Seq data
☆11May 4, 2021Updated 5 years ago
Alternatives and similar repositories for circminer
Users that are interested in circminer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 7 years ago
- 10x single cell short- and long-read RNA sequencing☆12Jan 17, 2024Updated 2 years ago
- Cancer circRNA identification pipeline with an ensemble approach☆19May 18, 2026Updated 5 months ago
- Visualize coverage, canonical, and backsplice junctions.☆12Aug 17, 2021Updated 5 years ago
- Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction a…☆17Nov 17, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Mar 19, 2026Updated 7 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated last year
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 7 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- ☆10Oct 18, 2021Updated 5 years ago
- a tool for identifying circular RNAs using RNA-Seq data☆11Aug 10, 2015Updated 11 years ago
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 6 years ago
- circular RNA quantification tools☆33Jun 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆19Jan 17, 2023Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆14Dec 1, 2023Updated 2 years ago
- ☆13Jun 27, 2024Updated 2 years ago
- Get per-nucleotide readcounts from samtools mpileup☆11Apr 17, 2018Updated 8 years ago
- Sample-specific CircRNA Viewer☆12Aug 15, 2018Updated 8 years ago
- circular RNA analysis toolset☆91Sep 8, 2024Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- ☆21Jul 13, 2026Updated 4 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated last year
- ☆16Mar 6, 2018Updated 8 years ago
- ☆11Jul 9, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A high-throughput analysis framework for Y-chromosomal next-generation sequencing data☆19Jun 11, 2021Updated 5 years ago
- Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection met…☆11Nov 7, 2025Updated last year
- Selective and Recursive local Assembler☆15Jan 31, 2022Updated 4 years ago
- Python interface to the MRC IEU OpenGWAS API☆17Mar 6, 2026Updated 8 months ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆27Sep 14, 2026Updated last month
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- ☆22Nov 21, 2016Updated 9 years ago
Are these results useful?