vpc-ccg / scTagger
10x single cell short- and long-read RNA sequencing
☆11Updated last year
Alternatives and similar repositories for scTagger:
Users that are interested in scTagger are comparing it to the libraries listed below
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated 11 months ago
- ☆28Updated 3 months ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 4 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 11 months ago
- ☆46Updated 8 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- polyApipe☆14Updated last month
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- ☆18Updated last year
- ☆16Updated 2 years ago
- Micro DNA identification☆22Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 8 months ago
- ☆11Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- ☆38Updated 5 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated 2 weeks ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago