vpc-ccg / scTagger
10x single cell short- and long-read RNA sequencing
☆11Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for scTagger
- Benchmarking long-read RNA-seq analysis tools☆25Updated 9 months ago
- ☆40Updated 3 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- ☆23Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated last year
- SingleCell Nanopore sequencing data analysis☆52Updated 2 weeks ago
- Full-length transcriptome splicing and mutation analysis☆73Updated 4 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆18Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated this week
- Micro DNA identification☆22Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 6 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆15Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆35Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- ☆20Updated last year
- Long read to rMATS☆31Updated last year
- ☆33Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆15Updated this week
- Genome-wide assessment of differential translations with ribosome profiling data☆18Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- ☆20Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 6 months ago