YangLab / CIRCexplorer2

Related projects ⓘ

Alternatives and complementary repositories for CIRCexplorer2

• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆142Updated last year
• Xinglab / rmats2sashimiplot
  ☆135Updated 2 months ago
• TrinityCTAT / Trinity_CTAT
  ☆115Updated last year
• YangLab / CIRCexplorer
  A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …
  ☆60Updated 5 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆57Updated last year
• bioinform / rnacocktail
  ☆88Updated 4 years ago
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆120Updated 4 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆115Updated 2 years ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆125Updated 4 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆103Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆107Updated 2 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆92Updated 3 years ago
• sztup / scarHRD
  ☆103Updated last year
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆120Updated 2 months ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆60Updated 2 weeks ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆138Updated 2 months ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆162Updated 4 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆61Updated 3 years ago
• brentp / bwa-meth
  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
  ☆143Updated 2 months ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆107Updated 2 months ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆135Updated 4 months ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆166Updated last week
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆133Updated last week
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆94Updated 6 months ago
• broadinstitute / PhylogicNDT
  ☆70Updated 6 months ago
• xryanglab / RiboCode
  release version
  ☆47Updated 2 years ago