YangLab / CIRCexplorer2Links
circular RNA analysis toolset
☆85Updated last year
Alternatives and similar repositories for CIRCexplorer2
Users that are interested in CIRCexplorer2 are comparing it to the libraries listed below
Sorting:
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- ☆153Updated 5 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- Check strandedness of RNA-Seq fastq files☆127Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆74Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆113Updated 7 months ago
- Annotates variants in MAF with OncoKB annotation.☆136Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆147Updated last year
- release version☆54Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- microRNA profiling pipeline☆78Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- ☆157Updated 3 years ago
- ☆117Updated 2 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Microbial analysis in TCGA data☆92Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆59Updated 3 months ago