orzechoj / circRNA_finderLinks
Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
☆17Updated 2 years ago
Alternatives and similar repositories for circRNA_finder
Users that are interested in circRNA_finder are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- ☆38Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆72Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 4 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆36Updated 4 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 weeks ago
- Tools for analyzing DNA methylation data☆44Updated last week
- Tutorial Website☆60Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 9 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A factor analysis package☆102Updated 13 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago