Alternatives and similar repositories for circRNA_finder:

Users that are interested in circRNA_finder are comparing it to the libraries listed below

• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆42Updated 7 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 2 weeks ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆15Updated 4 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆14Updated last year
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• Aufiero / circRNAprofiler
  ☆10Updated 5 months ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆35Updated last year
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆39Updated last month
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆55Updated 4 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 3 years ago
• aryeelab / bisulfite-seq-tools
  Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…
  ☆19Updated 4 years ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 4 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆44Updated 2 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated last year