Alternatives and similar repositories for compression-benchmark:

Users that are interested in compression-benchmark are comparing it to the libraries listed below

• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆15Updated last year
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• smarco / gem3-mapper
  GEM-Mapper v3
  ☆58Updated 2 weeks ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆98Updated 2 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆54Updated last year
• nanoporetech / sloika
  Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
  ☆25Updated 2 years ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆65Updated 6 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• morrislab / phylowgs
  Application for inferring subclonal composition and evolution from whole-genome sequencing data.
  ☆108Updated 2 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 9 years ago
• kaist-ina / BWA-MEME
  BWA-MEME: Faster BWA-MEM2 using learned-index
  ☆117Updated 8 months ago
• data-science-sequencing / data-science-sequencing.github.io
  Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
  ☆67Updated 3 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆63Updated last month
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆41Updated 9 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆82Updated 6 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆76Updated 2 months ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆32Updated 5 years ago
• LooseLab / bulkvis
  ☆47Updated 4 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆86Updated 7 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• minhhpham / bwa
  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
  ☆17Updated last year
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆106Updated last week
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year