Alternatives and similar repositories for CIRIquant

Users that are interested in CIRIquant are comparing it to the libraries listed below

• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆46Updated 5 months ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆72Updated 4 months ago
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆22Updated 4 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆43Updated 8 months ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆61Updated 2 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 6 months ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• XWangLabTHU / DISMIR
  ☆24Updated 3 years ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆46Updated 4 years ago
• menghaowei / Detect-seq
  An unbiased method for genome-wide CBE off-targets assessment
  ☆13Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆65Updated last year
• sunnyisgalaxy / moabs
  A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data
  ☆17Updated 4 years ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆73Updated 2 months ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆53Updated last month
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆84Updated last year
• bioinfo-biols / CIRI-long
  Circular RNA Identification for Nanopore Sequencing
  ☆21Updated last year
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• BioinfoUNIBA / REDItools2
  ☆58Updated last month
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated 7 months ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆68Updated last month
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆44Updated 7 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆61Updated last year
• GuipengLi / ChIA-PET2
  a versatile and flexible pipeline for analysing different variants of ChIA-PET data
  ☆34Updated 9 months ago