circular RNA quantification tools
☆32Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for CIRIquant
Users that are interested in CIRIquant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- ☆11Mar 19, 2026Updated 5 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated 11 months ago
- circular RNA analysis toolset☆90Sep 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 9 months ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆18Jan 17, 2023Updated 3 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- ☆17Jul 5, 2022Updated 4 years ago
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Circular RNA Identification for Nanopore Sequencing☆23May 23, 2024Updated 2 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- HLA-II ligand predictor.☆51Aug 25, 2026Updated last week
- ☆13Jul 28, 2026Updated last month
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61Updated this week
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆14Aug 18, 2026Updated 2 weeks ago
- ☆29Apr 23, 2025Updated last year
- ☆18Feb 19, 2026Updated 6 months ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆15Nov 25, 2019Updated 6 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 8 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 9, 2026Updated 2 months ago
- Spliced read mapper for RNA-Seq☆22May 24, 2018Updated 8 years ago
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago