vitmy0000 / SENSE
Siamese neural network for sequence embedding
☆20Updated 7 years ago
Alternatives and similar repositories for SENSE:
Users that are interested in SENSE are comparing it to the libraries listed below
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Updated 6 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆34Updated 3 weeks ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- ☆44Updated 4 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆16Updated 3 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Updated 4 years ago
- DeepContact Software☆26Updated 6 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 4 months ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- Function prediction using a deep ontology-aware classifier☆82Updated 2 years ago
- DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction☆16Updated last year
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- ☆25Updated 2 years ago
- ☆18Updated 2 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- Software for article "Deep learning to predict the lab-of-origin of engineered DNA"☆13Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆29Updated 4 years ago