bhi-kimlab / DeepFam
Deep learning based alignment-free method for protein family modeling and prediction
☆17Updated 6 years ago
Alternatives and similar repositories for DeepFam:
Users that are interested in DeepFam are comparing it to the libraries listed below
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 4 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆28Updated 7 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆9Updated 3 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- ☆25Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- A mini-framework to build and train neural networks for molecular biology.☆10Updated 6 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 5 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆27Updated 9 months ago
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆56Updated 9 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- SciLK: a Scientific natural Language Toolkit☆8Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆24Updated 8 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 7 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆17Updated 7 years ago
- Neural networks for amino acid sequences☆20Updated 6 years ago
- Disease pathways in the human interactome☆24Updated 6 years ago
- ☆16Updated 7 months ago
- Siamese neural network for sequence embedding☆20Updated 6 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines o…☆26Updated 4 years ago