Alternatives and similar repositories for DeepFam

Users that are interested in DeepFam are comparing it to the libraries listed below

• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• xypan1232 / iDeepV
  iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.
  ☆10Updated 6 years ago
• minxueric / ismb2017_lstm
  Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding
  ☆14Updated 7 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• ddofer / asap
  Amino-Acid Sequence Annotation Predictor (ASAP)
  ☆25Updated 5 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• harvardnlp / regulatory-prediction
  Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…
  ☆29Updated 8 years ago
• openvax / pepnet
  Neural networks for amino acid sequences
  ☆21Updated 7 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• vitmy0000 / SENSE
  Siamese neural network for sequence embedding
  ☆20Updated 7 years ago
• ehsanasgari / Deep-Proteomics
  ☆52Updated 5 years ago
• mitmedialab / Evolutron
  A mini-framework to build and train neural networks for molecular biology.
  ☆10Updated 7 years ago
• nstrodt / USMPep
  Major Histocompatibility Complex (MHC) Binding Affinity Prediction
  ☆10Updated 4 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆41Updated 2 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 5 years ago
• ddofer / ProFET
  ProFET: Protein Feature Engineering Toolkit for Machine Learning
  ☆58Updated 10 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆13Updated 7 years ago
• hzi-bifo / epitope-prediction
  ☆19Updated last year
• largelymfs / DeepFold
  Learning structural motif representations for efficient protein structure search
  ☆19Updated 8 years ago
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago
• ehsanasgari / DeepPrime2Sec
  ☆26Updated 3 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 8 months ago
• lamoureux-lab / 3DCNN_MQA
  Deep convolutional networks for fold recognition
  ☆22Updated 6 years ago
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆95Updated 7 years ago
• ericmjl / flu-sequence-predictor
  An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.
  ☆36Updated 2 years ago
• xypan1232 / iDeepS
  inferring sequence-structure motifs using deep learning
  ☆40Updated 2 years ago