Deep learning based alignment-free method for protein family modeling and prediction
☆16Jul 31, 2018Updated 7 years ago
Alternatives and similar repositories for DeepFam
Users that are interested in DeepFam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last month
- ☆18Aug 28, 2023Updated 2 years ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 4 years ago
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- ☆15Dec 21, 2021Updated 4 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 7 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- A simple workflow for minimum energy conformer search based on force field optimization methods (UFF and MMFF94) available from RDKit.☆13May 29, 2020Updated 5 years ago
- ☆23Jun 11, 2019Updated 6 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Synthesis of molecules from fragments into larger molecules using graph-based representations and techniques.☆13Nov 25, 2015Updated 10 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- CArbohydrate-Protein Site IdentiFier☆15Aug 22, 2023Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Markov State Models on the Muller potential: a MSMBuilder Tutorial☆12Mar 18, 2013Updated 13 years ago
- A Generalised workflow for obtaining protein and peptide molecular structures, docking the peptide into the protein and running a molecul…☆15Jan 1, 2025Updated last year
- A flexible implementation of enhanced suffix arrays in template based C++. Supports single and multi-position wildcard. Fast queries than…☆21Oct 1, 2020Updated 5 years ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- Alignment-free structure prediction using protein language models☆22Nov 2, 2022Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Data visualizations for biomolecular dynamics☆17Oct 30, 2018Updated 7 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 2 years ago
- Polarisable force field for ionic liquids☆17Feb 11, 2026Updated last month
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- reboot of differential equations thing☆12Nov 29, 2015Updated 10 years ago
- Fast and accurate protein structure prediction☆57Jan 17, 2025Updated last year
- ☆59Nov 7, 2025Updated 4 months ago
- Explore using "Conditional Neural Process" for clustering longitudinal data efficiently☆13Oct 7, 2018Updated 7 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Feb 6, 2019Updated 7 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 2 months ago
- ☆17Feb 10, 2026Updated last month
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 9 months ago