bhi-kimlab / DeepFam
Deep learning based alignment-free method for protein family modeling and prediction
☆16Updated 6 years ago
Alternatives and similar repositories for DeepFam:
Users that are interested in DeepFam are comparing it to the libraries listed below
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- ☆25Updated 2 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Updated 7 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- ☆27Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 7 years ago
- ☆51Updated 4 years ago
- Siamese neural network for sequence embedding☆20Updated 7 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 6 years ago
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆57Updated 9 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 4 years ago
- Neural networks for amino acid sequences☆20Updated 7 years ago
- ☆34Updated 4 years ago
- DeepContact Software☆26Updated 6 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆17Updated 7 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- The Complete Python Antibody Library☆22Updated 8 months ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 3 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Updated 4 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction☆16Updated last year